Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs12665983 chr7:57814156 A/T 1.47E-6 371 23.07 20.7 11.92 KM Plot
CRC rs12667088 chr7:62071297 C/A 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs12667654 chr7:57785852 G/T 1.82E-6 371 23.6 20.47 11.92 KM Plot
CRC rs12670129 chr7:62141966 C/T 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs12670434 chr7:57827702 C/T 1.51E-6 371 23.37 20.38 11.92 KM Plot
CRC rs12670514 chr7:61995167 C/T 7.81E-7 366 23.1 20.3 11.27 KM Plot
CRC rs12670564 chr7:61998781 T/A 8.37E-7 365 22.67 20.3 11.27 KM Plot
CRC rs12671187 chr7:62119089 C/A 6.75E-8 369 24.33 19.93 10.22 KM Plot
CRC rs12672618 chr7:57789113 T/C 1.82E-6 371 23.6 20.47 11.92 KM Plot
CRC rs12673541 chr7:57772287 A/C 1.75E-6 372 23.37 20.47 11.92 KM Plot
CRC rs12673859 chr7:57812010 T/G 1.47E-6 371 23.07 20.7 11.92 KM Plot
CRC rs12674363 chr7:61982313 C/G 8.37E-7 365 22.67 20.3 11.27 KM Plot
CRC rs12698214 chr7:158136204 T/G 2.8E-6 358 21.9 25.13 14.87 KM Plot
CRC rs13219048 chr6:161804651 C/T 1.9E-7 370 22.4 17.6 8.73 KM Plot
CRC rs13222953 chr7:57767936 T/A 1.6E-5 371 23.83 20.38 12.6 KM Plot